PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02896.1.p
Common NameEUGRSUZ_B02896, LOC104433192
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 230aa    MW: 25926.5 Da    PI: 9.5215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02896.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W+++Ed++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
  Eucgr.B02896.1.p 13 KGAWSKQEDQKLIDYIRKHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 60
                      79******************************99************97 PP

2Myb_DNA-binding52.31.3e-1666111148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Eucgr.B02896.1.p  66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                       8999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23463IPR009057Homeodomain-like
PROSITE profilePS5129417.304860IPR017930Myb domain
SuperFamilySSF466891.76E-2811107IPR009057Homeodomain-like
SMARTSM007178.7E-141262IPR001005SANT/Myb domain
PfamPF002491.2E-151360IPR001005SANT/Myb domain
CDDcd001673.22E-111560No hitNo description
PROSITE profilePS5129426.90661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2664116IPR009057Homeodomain-like
SMARTSM007171.0E-1565113IPR001005SANT/Myb domain
PfamPF002493.5E-1566111IPR001005SANT/Myb domain
CDDcd001672.64E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MRKPCCDKQD TNKGAWSKQE DQKLIDYIRK HGEGCWRTLP KAAGLLRCGK SCRLRWINYL  60
RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLINMGI  120
DPNNHRLNQT PPRLESSNNV SVSANSSGLK TRQSPRPKSC GGDKDQVSDA GSCLEDEPSR  180
LPDLNLDLTI SIPSPSPAKI EKEQKPCSYK HDMLRDSDIA TSPALVLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30101154108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02896.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044170.11e-169PREDICTED: transcription repressor MYB4-like
SwissprotQ9SZP17e-81MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A059D6I41e-168A0A059D6I4_EUCGR; Uncharacterized protein
STRINGPOPTR_0010s12420.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-78myb domain protein 4